PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.5777s0002.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 176aa    MW: 19455.4 Da    PI: 3.9635
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.5777s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.13.2e-181597896
                         -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3  8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                          ++ +s+ l +p+ + e+   + + +kt +l+ + gr W+v +    k++++++++GW +Fv +n+Lk+g+f++F +dg+++    v++
  Araha.5777s0002.1.p 15 LSNISSNSLLIPRVYYEHL--PRRLPKTAILTGTGGRFWKVAM--LSKREQVYFEQGWGNFVADNDLKDGEFLTFVFDGHKSY--EVSI 97
                         67888999********554..456899****************..99999**************************9987655..5555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.49E-218103IPR015300DNA-binding pseudobarrel domain
CDDcd100177.83E-18898No hitNo description
PROSITE profilePS5086313.9028101IPR003340B3 DNA binding domain
SMARTSM010194.9E-1710101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.1E-1910100IPR015300DNA-binding pseudobarrel domain
PfamPF023622.3E-151397IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MASGDVLPRF YTVFLSNISS NSLLIPRVYY EHLPRRLPKT AILTGTGGRF WKVAMLSKRE  60
QVYFEQGWGN FVADNDLKDG EFLTFVFDGH KSYEVSIYGR GECKETRAVI QVEEISDETE  120
SDNDSLGSLV DVTPMPVEEN SDDTEGDSSD SGDSVVDVTP MPVEEISDAS ESDFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A7e-19910310104At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936040.0AB493604.1 Arabidopsis thaliana At3g06220 mRNA for hypothetical protein, partial cds, clone: RAAt3g06220.
GenBankDQ4466400.0DQ446640.1 Arabidopsis thaliana clone pENTR221-At3g06220 transcriptional factor B3 family protein (At3g06220) mRNA, complete cds.
GenBankDQ6530690.0DQ653069.1 Arabidopsis thaliana clone 0000017013_0000011937 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884564.11e-118hypothetical protein ARALYDRAFT_317484
SwissprotQ1PES71e-111Y3622_ARATH; B3 domain-containing protein At3g06220
TrEMBLD7L4T41e-118D7L4T4_ARALL; Putative uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_30005001e-117(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.12e-90B3 family protein